With all versions of HB I've tried, including 0.9.1, 0.9.3, and SVN 2070, the disks from the anime series "Magic Knight Rayearth" only show one of the four or five episode tracks per disk. I tried both a ripped image from MtR, and the disk itself. Here's the log from my attempt to scan disk 1:
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[11:10:38] macgui: trying to open video_ts folder (video_ts folder chosen)
[11:10:38] hb_scan: path=/Volumes/ãããã¼/DVDs/MKR Disk 1/VIDEO_TS, title_index=0
[11:10:38] scan: trying to open with libdvdread
[11:10:39] scan: DVD has 13 title(s)
[11:10:39] scan: scanning title 1
[11:10:39] scan: opening IFO for VTS 1
[11:10:39] pgc_id: 1, pgn: 1: pgc: 0x8969550
[11:10:39] scan: vts=1, ttn=1, cells=0->0, blocks=0->48062, 48063 blocks
[11:10:39] scan: duration is 00:01:32 (92010 ms)
[11:10:39] scan: checking audio 1
[11:10:39] scan: id=80bd, lang=English (AC3), 3cc=eng ext=0
[11:10:39] scan: checking audio 2
[11:10:39] scan: id=81bd, lang=Japanese (AC3), 3cc=jpn ext=0
[11:10:39] scan: checking subtitle 1
[11:10:39] scan: id=20bd, lang=Japanese, 3cc=jpn
[11:10:39] scan: title 1 has 3 chapters
[11:10:39] scan: chap 3 c=0->0, b=95931->95934 (48063), 92010 ms
[11:10:39] scan: aspect = 0
[11:10:39] scan: scanning title 2
[11:10:39] scan: opening IFO for VTS 1
[11:10:39] pgc_id: 4, pgn: 1: pgc: 0x8969b40
[11:10:39] scan: vts=1, ttn=2, cells=0->1, blocks=95935->537552, 441618 blocks
[11:10:39] scan: duration is 00:20:28 (1228276 ms)
[11:10:39] scan: checking audio 1
[11:10:39] scan: id=80bd, lang=English (AC3), 3cc=eng ext=0
[11:10:39] scan: checking audio 2
[11:10:39] scan: id=81bd, lang=Japanese (AC3), 3cc=jpn ext=0
[11:10:39] scan: checking subtitle 1
[11:10:39] scan: id=20bd, lang=Japanese, 3cc=jpn
[11:10:39] scan: title 2 has 9 chapters
[11:10:39] scan: chap 1 c=0->0, b=95935->302391 (206457), 200069 ms
[11:10:39] scan: chap 3 c=0->0, b=537553->727746 (206457), 200069 ms
[11:10:39] scan: chap 5 c=0->0, b=984942->1218158 (206457), 200069 ms
[11:10:39] scan: chap 7 c=0->0, b=1432125->1638831 (206457), 200069 ms
[11:10:39] scan: chap 9 c=0->1, b=1879540->-2130673664 (441618), 427996 ms
[11:10:39] scan: aspect = 0
[11:10:39] scan: scanning title 3
[11:10:39] scan: opening IFO for VTS 1
[11:10:39] pgc_id: 9, pgn: 1: pgc: 0x896a480
[11:10:39] scan: vts=1, ttn=3, cells=0->0, blocks=1879544->1928275, 48732 blocks
[11:10:39] scan: duration is 00:01:33 (93086 ms)
[11:10:39] scan: checking audio 1
[11:10:39] scan: id=80bd, lang=English (AC3), 3cc=eng ext=0
[11:10:39] scan: checking audio 2
[11:10:39] scan: id=81bd, lang=Japanese (AC3), 3cc=jpn ext=0
[11:10:39] scan: checking subtitle 1
[11:10:39] scan: id=20bd, lang=Japanese, 3cc=jpn
[11:10:39] scan: title 3 has 4 chapters
[11:10:39] scan: chap 4 c=0->0, b=1976729->1999720 (48732), 93086 ms
[11:10:39] scan: aspect = 0
[11:10:39] scan: scanning title 4
[11:10:39] scan: opening IFO for VTS 1
[11:10:39] pgc_id: 13, pgn: 1: pgc: 0x896a780
[11:10:39] scan: vts=1, ttn=4, cells=0->0, blocks=1999721->2013059, 13339 blocks
[11:10:39] scan: duration is 00:00:38 (38043 ms)
[11:10:39] scan: checking audio 1
[11:10:39] scan: id=80bd, lang=English (AC3), 3cc=eng ext=0
[11:10:39] scan: checking audio 2
[11:10:39] scan: id=81bd, lang=Japanese (AC3), 3cc=jpn ext=0
[11:10:39] scan: checking subtitle 1
[11:10:39] scan: id=20bd, lang=Japanese, 3cc=jpn
[11:10:39] scan: title 4 has 1 chapters
[11:10:39] scan: chap 1 c=0->0, b=1999721->2013059 (13339), 38043 ms
[11:10:39] scan: aspect = 0
[11:10:39] scan: scanning title 5
[11:10:39] scan: opening IFO for VTS 1
[11:10:39] pgc_id: 3, pgn: 49152: pgc: 0x8969e70
GUI ERROR dialog: scan: pgn 49152 not valid, skipping
[11:10:39] scan: scanning title 6
[11:10:39] scan: opening IFO for VTS 2
[11:10:39] pgc_id: 1, pgn: 1: pgc: 0x895cc40
[11:10:39] scan: vts=2, ttn=1, cells=0->0, blocks=0->35754, 35755 blocks
[11:10:39] scan: duration is 00:02:03 (123033 ms)
[11:10:39] scan: checking audio 1
[11:10:39] scan: id=80bd, lang=Unknown (AC3), 3cc=und ext=0
[11:10:39] scan: title 6 has 7 chapters
[11:10:39] scan: chap 7 c=0->0, b=155872->155882 (35755), 123033 ms
[11:10:39] scan: aspect = 0
[11:10:39] scan: scanning title 7
[11:10:39] scan: opening IFO for VTS 3
[11:10:39] pgc_id: 1, pgn: 1: pgc: 0x168eb7a0
[11:10:39] scan: vts=3, ttn=1, cells=0->8, blocks=0->369, 370 blocks
[11:10:39] scan: duration is 00:00:03 (3276 ms)
[11:10:39] scan: ignoring title (too short)
[11:10:39] scan: scanning title 8
[11:10:39] scan: opening IFO for VTS 3
[11:10:39] pgc_id: 2, pgn: 1: pgc: 0x168eb7a0
[11:10:39] scan: vts=3, ttn=2, cells=0->0, blocks=370->415, 46 blocks
[11:10:39] scan: duration is 00:00:00 (76 ms)
[11:10:39] scan: ignoring title (too short)
[11:10:39] scan: scanning title 9
[11:10:39] scan: opening IFO for VTS 3
[11:10:39] pgc_id: 4, pgn: 1: pgc: 0x168eb7a0
[11:10:39] scan: vts=3, ttn=3, cells=0->0, blocks=420->436, 17 blocks
[11:10:39] scan: duration is 00:00:00 (76 ms)
[11:10:39] scan: ignoring title (too short)
[11:10:39] scan: scanning title 10
[11:10:39] scan: opening IFO for VTS 3
[11:10:39] pgc_id: 7, pgn: 1: pgc: 0x168eac00
[11:10:39] scan: vts=3, ttn=4, cells=0->0, blocks=31934->32184, 251 blocks
[11:10:39] scan: duration is 00:00:12 (12266 ms)
[11:10:39] scan: checking audio 1
[11:10:39] scan: id=80bd, lang=Unknown (AC3), 3cc=und ext=0
[11:10:39] scan: checking audio 2
[11:10:39] scan: id=81bd, lang=Unknown (AC3), 3cc=und ext=0
[11:10:39] scan: checking subtitle 1
[11:10:39] scan: id=20bd, lang=Unknown, 3cc=und
[11:10:39] scan: title 10 has 15 chapters
[11:10:39] scan: chap 15 c=0->0, b=34459->34462 (251), 12266 ms
[11:10:39] scan: aspect = 0
[11:10:39] scan: scanning title 11
[11:10:39] scan: opening IFO for VTS 3
[11:10:39] pgc_id: 22, pgn: 1: pgc: 0x893dc60
[11:10:39] scan: vts=3, ttn=5, cells=0->0, blocks=34463->39771, 5309 blocks
[11:10:39] scan: duration is 00:00:15 (15133 ms)
[11:10:39] scan: checking audio 1
[11:10:39] scan: id=80bd, lang=Unknown (AC3), 3cc=und ext=0
[11:10:39] scan: checking audio 2
[11:10:39] scan: id=81bd, lang=Unknown (AC3), 3cc=und ext=0
[11:10:39] scan: checking subtitle 1
[11:10:39] scan: id=20bd, lang=Unknown, 3cc=und
[11:10:39] scan: title 11 has 1 chapters
[11:10:39] scan: chap 1 c=0->0, b=34463->39771 (5309), 15133 ms
[11:10:39] scan: aspect = 0
[11:10:39] scan: scanning title 12
[11:10:39] scan: opening IFO for VTS 4
[11:10:39] pgc_id: 3, pgn: 49152: pgc: 0x2
GUI ERROR dialog: scan: pgn 49152 not valid, skipping
[11:10:39] scan: scanning title 13
[11:10:39] scan: opening IFO for VTS 5
[11:10:39] pgc_id: 3, pgn: 49152: pgc: 0xa02a3ee0
GUI ERROR dialog: scan: pgn 49152 not valid, skipping
[11:10:39] scan: decoding previews for title 1
[11:10:40] scan: audio 0x81bd: AC-3, rate=48000Hz, bitrate=192000 Japanese (AC3) (2.0 ch)
[11:10:40] scan: audio 0x80bd: AC-3, rate=48000Hz, bitrate=192000 English (AC3) (2.0 ch)
[11:10:40] 33.920044s: Film -> Video
[11:10:40] 2209.279053s: Video -> Film
[11:10:40] 59.078510s: Film -> Video
[11:10:40] 2209.395752s: Video -> Film
[11:10:40] scan: 10 previews, 720x480, 29.970 fps, autocrop = 0/0/6/4, aspect 4:3, PAR 8:9
[11:10:40] scan: decoding previews for title 2
[11:10:41] scan: audio 0x80bd: AC-3, rate=48000Hz, bitrate=192000 English (AC3) (2.0 ch)
[11:10:41] scan: audio 0x81bd: AC-3, rate=48000Hz, bitrate=192000 Japanese (AC3) (2.0 ch)
[11:10:41] 223.915115s: Film -> Video
[11:10:41] 2209.529297s: Video -> Film
[11:10:41] 783.040344s: Film -> Video
[11:10:41] 2209.696045s: Video -> Film
[11:10:41] scan: 10 previews, 720x480, 29.970 fps, autocrop = 2/0/8/6, aspect 4:3, PAR 8:9
[11:10:41] scan: decoding previews for title 3
[11:10:42] scan: audio 0x81bd: AC-3, rate=48000Hz, bitrate=192000 Japanese (AC3) (2.0 ch)
[11:10:42] scan: audio 0x80bd: AC-3, rate=48000Hz, bitrate=192000 English (AC3) (2.0 ch)
[11:10:42] 17.458221s: Film -> Video
[11:10:42] 2209.812744s: Video -> Film
[11:10:42] 43.484222s: Film -> Video
[11:10:42] 2209.863037s: Video -> Film
[11:10:42] 59.967354s: Film -> Video
[11:10:42] 2209.896240s: Video -> Film
[11:10:42] 85.993355s: Film -> Video
[11:10:42] scan: 10 previews, 720x480, 29.970 fps, autocrop = 0/0/8/4, aspect 4:3, PAR 8:9
[11:10:42] scan: decoding previews for title 4
[11:10:42] 2210.029785s: Video -> Film
[11:10:43] scan: audio 0x80bd: AC-3, rate=48000Hz, bitrate=192000 English (AC3) (2.0 ch)
[11:10:44] Warning: Could not read data for preview 3, skipped
[11:10:44] Warning: Could not read data for preview 4, skipped
[11:10:44] Warning: Could not read data for preview 5, skipped
[11:10:44] 21.766378s: Film -> Video
[11:10:44] Warning: Could not read data for preview 6, skipped
[11:10:44] Warning: Could not read data for preview 7, skipped
[11:10:44] 2210.480225s: Video -> Film
[11:10:44] Warning: Could not read data for preview 8, skipped
[11:10:45] Warning: Could not read data for preview 9, skipped
[11:10:45] 35.646912s: Film -> Video
[11:10:45] Warning: Could not read data for preview 10, skipped
[11:10:45] scan: 2 previews, 720x480, 29.970 fps, autocrop = 0/0/0/0, aspect 4:3, PAR 8:9
[11:10:45] scan: removing audio 0x81bd because no bitrate found
[11:10:45] scan: decoding previews for title 6
[11:10:45] 2210.613770s: Video -> Film
[11:10:45] scan: audio 0x80bd: AC-3, rate=48000Hz, bitrate=192000 Unknown (AC3) (2.0 ch)
[11:10:45] 33.899612s: Film -> Video
[11:10:45] 2210.780518s: Video -> Film
[11:10:45] 67.733414s: Film -> Video
[11:10:45] 2210.863770s: Video -> Film
[11:10:45] 89.421745s: Film -> Video
[11:10:45] 2210.897217s: Video -> Film
[11:10:46] 111.977608s: Film -> Video
[11:10:46] scan: 10 previews, 720x480, 29.970 fps, autocrop = 2/0/6/8, aspect 4:3, PAR 8:9
[11:10:46] scan: decoding previews for title 10
[11:10:46] 2210.947266s: Video -> Film
[11:10:46] scan: audio 0x80bd: AC-3, rate=48000Hz, bitrate=192000 Unknown (AC3) (1.0 ch)
[11:10:46] Warning: Could not read data for preview 1, skipped
[11:10:46] Warning: Could not read data for preview 2, skipped
[11:10:46] Warning: Could not read data for preview 3, skipped
[11:10:46] Warning: Could not read data for preview 4, skipped
[11:10:46] dvd: null prev_vobu in cell 0 at block 32048
[11:10:46] Warning: Could not read data for preview 5, skipped
[11:10:46] dvd: null prev_vobu in cell 0 at block 32070
[11:10:46] Warning: Could not read data for preview 6, skipped
[11:10:46] dvd: null prev_vobu in cell 0 at block 32093
[11:10:46] Warning: Could not read data for preview 7, skipped
[11:10:46] dvd: null prev_vobu in cell 0 at block 32116
[11:10:46] Warning: Could not read data for preview 8, skipped
[11:10:46] dvd: null prev_vobu in cell 0 at block 32139
[11:10:46] Warning: Could not read data for preview 9, skipped
[11:10:46] dvd: null prev_vobu in cell 0 at block 32172
[11:10:46] Warning: Could not read data for preview 10, skipped
[11:10:46] scan: decoding previews for title 11
[11:10:46] scan: audio 0x81bd: AC-3, rate=48000Hz, bitrate=192000 Unknown (AC3) (2.0 ch)
[11:10:46] scan: audio 0x80bd: AC-3, rate=48000Hz, bitrate=192000 Unknown (AC3) (2.0 ch)
[11:10:46] 3.578900s: Film -> Video
[11:10:46] 2211.114014s: Video -> Film
[11:10:46] 11.386700s: Film -> Video
[11:10:46] 2211.197510s: Video -> Film
[11:10:46] scan: 10 previews, 720x480, 29.970 fps, autocrop = 2/0/10/4, aspect 4:3, PAR 8:9
[11:10:46] scan: title (0) job->width:624, job->height:480
[11:10:46] scan: title (1) job->width:624, job->height:480
[11:10:46] scan: title (2) job->width:624, job->height:480
[11:10:46] scan: title (3) job->width:640, job->height:480
[11:10:46] scan: title (4) job->width:624, job->height:480
[11:10:46] scan: title (5) job->width:624, job->height:480
[11:10:47] libhb: scan thread found 6 valid title(s)
[11:10:47] macgui: ScanDone state received from fHandle