I'm using nightly build 6117. Here's a copy of the log from one of the times it's happened.
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HandBrake svn6117 (Nightly Build) - 64bit Version
OS: Microsoft Windows NT 6.2.9200.0
CPU: Intel(R) Core(TM) i7-4770K CPU @ 3.50GHz
Ram: 8069 MB,
GPU Information:
Intel(R) HD Graphics 4600 - 10.18.10.3496
AMD Radeon R9 200 Series - 13.350.1005.0
Screen: 1920x1080
Temp Dir: C:\Users\Brian\AppData\Local\Temp\
Install Dir: C:\Program Files\Handbrake
Data Dir: C:\Users\Brian\AppData\Roaming\HandBrake\HandBrake\0.0.0.6117
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CLI Query: -i "D:\EXTRACT\DOWNTON ABBEY D1" -t 2 --angle 1 -c 1-7 -o "D:\FINALIZED\Downton Abbey D1-2-QSV.mkv" -f mkv --decomb -w 1916 --crop 0:0:2:2 --loose-anamorphic --modulus 2 -e qsv_h264 -q 20 --cfr -a 2 -E copy:dtshd -6 none -R Auto -B 0 -D 0 --gain 0 --audio-fallback ac3 --markers="C:\Users\Brian\AppData\Local\Temp\Downton Abbey D1-2-QSV-2-chapters.csv" --qsv-preset=quality --h264-level="4.1" --h264-profile=high --verbose=1
[00:21:22] hb_init: starting libhb thread
HandBrake svn6117 (2014031701) - MinGW x86_64 - http://handbrake.fr
8 CPUs detected
Opening D:\EXTRACT\DOWNTON ABBEY D1...
[00:21:22] CPU: Intel(R) Core(TM) i7-4770K CPU @ 3.50GHz
[00:21:22] - Intel microarchitecture Haswell
[00:21:22] - logical processor count: 8
[00:21:23] OpenCL device #1: Advanced Micro Devices, Inc. Tahiti
[00:21:23] - OpenCL version: 1.2 AMD-APP (1411.4)
[00:21:23] - driver version: 1411.4 (VM)
[00:21:23] - device type: GPU
[00:21:23] - supported: YES
[00:21:23] OpenCL device #2: Intel(R) Corporation Intel(R) HD Graphics 4600
[00:21:23] - OpenCL version: 1.2
[00:21:23] - driver version: 10.18.10.3496
[00:21:23] - device type: GPU
[00:21:23] - supported: YES
[00:21:23] Intel Quick Sync Video support: yes
[00:21:23] - Intel Media SDK hardware: API 1.8 (minimum: 1.3)
[00:21:23] - H.264 encoder: yes
[00:21:23] - preferred implementation: hardware (any)
[00:21:23] - H.265 encoder: no
[00:21:23] hb_scan: path=D:\EXTRACT\DOWNTON ABBEY D1, title_index=2
[00:21:23] scan: BD has 7 title(s)
[00:21:23] bd: scanning title 2
[00:21:23] bd: playlist 00001.MPLS
[00:21:23] bd: duration is 01:05:44 (3944807 ms)
[00:21:23] bd: video id=0x1011, stream type=H.264, format 1080i
[00:21:23] bd: aspect = 1.77778
[00:21:23] bd: audio id=0x711100, lang=English (DTS), 3cc=eng
[00:21:23] bd: audio id=0x1100, lang=English (DTS-HD MA), 3cc=eng
[00:21:23] bd: subtitle id=0x1200, lang=English, 3cc=eng
[00:21:23] bd: chap 1 packet=768, 564230 ms
[00:21:23] bd: chap 2 packet=2100185664, 577877 ms
[00:21:23] bd: chap 3 packet=4107236352, 598898 ms
[00:21:23] bd: chap 4 packet=6372852096, 509709 ms
[00:21:23] bd: chap 5 packet=8212806144, 914246 ms
[00:21:23] bd: chap 6 packet=11432524800, 779812 ms
[00:21:23] bd: chap 7 packet=13985497728, 33 ms
[00:21:23] bd: title 2 has 7 chapters
[00:21:23] scan: decoding previews for title 2
[00:21:23] scan: title angle(s) 1
[00:21:23] scan: audio 0x711100: dca, rate=48000Hz, bitrate=1536000 English (DTS) (2.0 ch)
[00:21:23] scan: audio 0x1100: dca, rate=48000Hz, bitrate=1536000 English (DTS-HD MA) (2.0 ch)
Scanning title 1 of 1, preview 2, 20.00 %
Scanning title 1 of 1, preview 4, 40.00 %
Scanning title 1 of 1, preview 6, 60.00 %
Scanning title 1 of 1, preview 7, 70.00 %
Scanning title 1 of 1, preview 9, 90.00 %[00:21:24] scan: 10 previews, 1920x1080, 29.970 fps, autocrop = 0/0/2/2, aspect 16:9, PAR 1:1
[00:21:24] stream: 26 good frames, 0 errors (0%)
[00:21:24] libhb: scan thread found 1 valid title(s)
+ title 2:
+ playlist: 00001.MPLS
+ duration: 01:05:44
+ size: 1920x1080, pixel aspect: 1/1, display aspect: 1.78, 29.970 fps
+ autocrop: 0/0/2/2
+ support opencl: yes
+ support hwd: no
+ chapters:
+ 1: cells 0->0, 0 blocks, duration 00:09:24
+ 2: cells 0->0, 0 blocks, duration 00:09:38
+ 3: cells 0->0, 0 blocks, duration 00:09:59
+ 4: cells 0->0, 0 blocks, duration 00:08:30
+ 5: cells 0->0, 0 blocks, duration 00:15:14
+ 6: cells 0->0, 0 blocks, duration 00:13:00
+ 7: cells 0->0, 0 blocks, duration 00:00:00
+ audio tracks:
+ 1, English (DTS) (2.0 ch) (iso639-2: eng), 48000Hz, 1536000bps
+ 2, English (DTS-HD MA) (2.0 ch) (iso639-2: eng)
+ subtitle tracks:
+ 1, English (iso639-2: eng) (Bitmap)(PGS)
Reading chapter markers from file C:\Users\Brian\AppData\Local\Temp\Downton Abbey D1-2-QSV-2-chapters.csv
[00:21:24] 1 job(s) to process
[00:21:24] starting job
[00:21:24] do_job: QSV: full path, removing unsupported filter 'Decomb'
[00:21:24] do_job: QSV: full path, removing unsupported filter 'Framerate Shaper'
[00:21:24] sync: expecting 118226 video frames
[00:21:24] job configuration:
[00:21:24] * source
[00:21:24] + D:\EXTRACT\DOWNTON ABBEY D1
[00:21:24] + title 2, chapter(s) 1 to 7
[00:21:24] * destination
[00:21:24] + D:\FINALIZED\Downton Abbey D1-2-QSV.mkv
[00:21:24] + container: Matroska (libavformat)
[00:21:24] + chapter markers
[00:21:24] * video track
[00:21:24] + decoder: h264_qsv
[00:21:24] + bitrate 200 kbps
[00:21:24] + filter
[00:21:24] + Quick Sync Video VPP (1916:1080:0:0:2:2_dei:0)
[00:21:24] + source: 1920 * 1080, crop (0/0/2/2): 1916 * 1080, scale: 1916 * 1080
[00:21:24] + loose anamorphic
[00:21:24] + storage dimensions: 1916 * 1080, mod 2
[00:21:24] + pixel aspect ratio: 1 / 1
[00:21:24] + display dimensions: 1916 * 1080
[00:21:24] + encoder: H.264 (Intel Media SDK)
[00:21:24] + QSV preset: quality
[00:21:24] + H.264 profile: high
[00:21:24] + H.264 level: 4.1
[00:21:24] + quality: 20.00 (ICQ)
[00:21:24] * audio track 1
[00:21:24] + decoder: English (DTS-HD MA) (2.0 ch) (track 2, id 0x1100)
[00:21:24] + bitrate: 1536 kbps, samplerate: 48000 Hz
[00:21:24] + DTS-HD Passthru
[00:21:24] reader: first SCR 53996997 id 0x1011 DTS 53996997
[00:21:24] h264_qsv: "Chapter 1" (1) at frame 0 time 3003
[00:21:24] encqsvInit: using full QSV path
[00:21:24] encqsvInit: TargetUsage 2 AsyncDepth 4
[00:21:24] encqsvInit: GopRefDist 3 GopPicSize 30 NumRefFrame 3
[00:21:24] encqsvInit: BFrames on BPyramid off
[00:21:24] encqsvInit: AdaptiveI on AdaptiveB on
[00:21:24] encqsvInit: RateControlMethod LA_ICQ ICQQuality 20 LookAheadDepth 40
[00:21:24] encqsvInit: LookAheadDS off
[00:21:24] encqsvInit: CAVLC off
[00:21:24] encqsvInit: Trellis off
[00:21:24] encqsvInit: H.264 profile High @ level 4.1
[00:21:24] sync: first pts is 3003
[00:21:25] qsv_enc_init: using 'hardware (3)' implementation, API: 1.8
[00:27:09] h264_qsv: "Chapter 2" (2) at frame 16909 time 50785217
[00:33:15] h264_qsv: "Chapter 3" (3) at frame 34228 time 102794174
[00:39:14] h264_qsv: "Chapter 4" (4) at frame 52176 time 156692018
[00:44:29] h264_qsv: "Chapter 5" (5) at frame 67453 time 202568849
[00:53:46] h264_qsv: "Chapter 6" (6) at frame 94853 time 284851049
[01:01:47] h264_qsv: "Chapter 7" (7) at frame 118213 time 355001129
[01:01:47] reader: done. 2 scr changes
Error code -17, av_qsv_wait_on_sync 642